HL_6XDQ_063
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGCUAACGU
- Length
- 9 nucleotides
- Bulged bases
- 6XDQ|1|a|U|958, 6XDQ|1|a|C|961
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XDQ_063 not in the Motif Atlas
- Homologous match to HL_5J7L_159
- Geometric discrepancy: 0.0554
- The information below is about HL_5J7L_159
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XDQ|1|a|G|954
6XDQ|1|a|G|956
6XDQ|1|a|C|957
6XDQ|1|a|U|958
6XDQ|1|a|A|959
6XDQ|1|a|A|960
6XDQ|1|a|C|961
6XDQ|1|a|G|962
6XDQ|1|a|U|963
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 5S ribosomal RNA; 5S rRNA
- Chain v
- 50S ribosomal protein L16
Coloring options: