HL_6XDR_004

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAGCCGGUAG

Length

10 nucleotides

Bulged bases

6XDR|1|B|C|16, 6XDR|1|B|C|17, 6XDR|1|B|G|18, 6XDR|1|B|G|19, 6XDR|1|B|U|20, 6XDR|1|B|A|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XDR|1|B|C|13
6XDR|1|B|A|14
6XDR|1|B|G|15
6XDR|1|B|C|16
6XDR|1|B|C|17
6XDR|1|B|G|18
6XDR|1|B|G|19
6XDR|1|B|U|20
6XDR|1|B|A|21
6XDR|1|B|G|22

Current chains

Chain B

E-site and P-site tRNA (fMet)

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA