HL_6XDR_039
3D structure
- PDB id
- 6XDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGAUAUGAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XDR_039 not in the Motif Atlas
- Homologous match to HL_5J7L_135
- Geometric discrepancy: 0.0824
- The information below is about HL_5J7L_135
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_80241.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6XDR|1|a|U|87
6XDR|1|a|G|88
6XDR|1|a|A|89
6XDR|1|a|U|90
6XDR|1|a|A|91
6XDR|1|a|U|92
6XDR|1|a|G|93
6XDR|1|a|A|94
6XDR|1|a|A|95
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L23
- Chain 3
- 50S ribosomal protein L24
- Chain e
- 50S ribosomal protein L29
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