3D structure

PDB id
6XDR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
CUGGAAAG
Length
8 nucleotides
Bulged bases
6XDR|1|a|A|311
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XDR_046 not in the Motif Atlas
Homologous match to HL_5J7L_142
Geometric discrepancy: 0.089
The information below is about HL_5J7L_142
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_01609.3
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
18

Unit IDs

6XDR|1|a|C|305
6XDR|1|a|U|306
6XDR|1|a|G|307
6XDR|1|a|G|308
6XDR|1|a|A|309
6XDR|1|a|A|310
6XDR|1|a|A|311
6XDR|1|a|G|312

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L24

Coloring options:


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