HL_6XDR_055

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

6XDR|1|a|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XDR_055 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.0871

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

6XDR|1|a|C|611
6XDR|1|a|G|612
6XDR|1|a|A|613
6XDR|1|a|A|614
6XDR|1|a|U|615
6XDR|1|a|A|616
6XDR|1|a|G|617

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L4