HL_6XDR_087
3D structure
- PDB id
- 6XDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GUGAGAUGC
- Length
- 9 nucleotides
- Bulged bases
- 6XDR|1|a|A|2031, 6XDR|1|a|G|2032
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XDR_087 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.1105
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6XDR|1|a|G|2027
6XDR|1|a|U|2028
6XDR|1|a|G|2029
6XDR|1|a|A|2031
6XDR|1|a|G|2032
6XDR|1|a|A|2033
6XDR|1|a|U|2034
6XDR|1|a|G|2035
6XDR|1|a|C|2036
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain i
- 50S ribosomal protein L32
- Chain j
- 50S ribosomal protein L3
Coloring options: