3D structure

PDB id
6XDR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
6XDR|1|a|G|2751, 6XDR|1|a|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XDR_103 not in the Motif Atlas
Homologous match to HL_4WF9_062
Geometric discrepancy: 0.1115
The information below is about HL_4WF9_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

6XDR|1|a|C|2745
6XDR|1|a|U|2746
6XDR|1|a|G|2747
6XDR|1|a|A|2748
6XDR|1|a|A|2749
6XDR|1|a|A|2750
6XDR|1|a|G|2751
6XDR|1|a|C|2752
6XDR|1|a|A|2753
6XDR|1|a|U|2754
6XDR|1|a|C|2755
6XDR|1|a|U|2756
6XDR|1|a|A|2757
6XDR|1|a|A|2758
6XDR|1|a|G|2759

Current chains

Chain a
23S rRNA

Nearby chains

Chain p
50S ribosomal protein L6
Chain q
50S ribosomal protein L36
Chain s
50S ribosomal protein L13

Coloring options:


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