HL_6XGF_015

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6XGF|1|D|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XGF_015 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1271

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6XGF|1|D|C|342
6XGF|1|D|U|343
6XGF|1|D|A|344
6XGF|1|D|C|345
6XGF|1|D|G|346
6XGF|1|D|G|347

Current chains

Chain D

16S rRNA

Nearby chains

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19