3D structure

PDB id
6XGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
5 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
6XGF|1|a|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XGF_054 not in the Motif Atlas
Homologous match to HL_5J7L_150
Geometric discrepancy: 0.0525
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

6XGF|1|a|U|566
6XGF|1|a|U|567
6XGF|1|a|U|568
6XGF|1|a|U|569
6XGF|1|a|G|570
6XGF|1|a|U|571
6XGF|1|a|A|572
6XGF|1|a|U|573
6XGF|1|a|A|574
6XGF|1|a|A|575

Current chains

Chain a
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L21
Chain i
50S ribosomal protein L32
Chain j
50S ribosomal protein L3
Chain u
50S ribosomal protein L15
Chain z
50S ribosomal protein L20

Coloring options:


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