HL_6XGF_073

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6XGF|1|a|A|1453, 6XGF|1|a|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XGF_073 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.116

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6XGF|1|a|C|1451
6XGF|1|a|G|1452
6XGF|1|a|A|1453
6XGF|1|a|C|1454
6XGF|1|a|G|1455
6XGF|1|a|G|1456
6XGF|1|a|U|1457
6XGF|1|a|U|1458
6XGF|1|a|G|1459

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

50S ribosomal protein L17