HL_6XGF_103

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6XGF|1|a|G|2751, 6XGF|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XGF_103 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1115

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6XGF|1|a|C|2745
6XGF|1|a|U|2746
6XGF|1|a|G|2747
6XGF|1|a|A|2748
6XGF|1|a|A|2749
6XGF|1|a|A|2750
6XGF|1|a|G|2751
6XGF|1|a|C|2752
6XGF|1|a|A|2753
6XGF|1|a|U|2754
6XGF|1|a|C|2755
6XGF|1|a|U|2756
6XGF|1|a|A|2757
6XGF|1|a|A|2758
6XGF|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36

Chain s

50S ribosomal protein L13