HL_6XGF_111

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GUCAACCCGAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XGF|1|a|G|883
6XGF|1|a|U|884
6XGF|1|a|C|885
6XGF|1|a|A|886
6XGF|1|a|A|887
6XGF|1|a|C|888
6XGF|1|a|C|889
6XGF|1|a|C|890
6XGF|1|a|G|891
6XGF|1|a|A|892
6XGF|1|a|C|893

Current chains

Chain a

23S rRNA

Nearby chains

Chain X

30S ribosomal protein S13