3D structure

PDB id
6XHV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
CUUUG
Length
5 nucleotides
Bulged bases
6XHV|1|1a|U|202, 6XHV|1|1a|U|204
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XHV_075 not in the Motif Atlas
Geometric match to HL_4L8H_001
Geometric discrepancy: 0.2559
The information below is about HL_4L8H_001
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_90436.1
Basepair signature
cWW-F
Number of instances in this motif group
37

Unit IDs

6XHV|1|1a|C|201
6XHV|1|1a|U|202
6XHV|1|1a|U|203
6XHV|1|1a|U|204
6XHV|1|1a|G|216

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3128 s