HL_6XHV_185

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XHV_185 not in the Motif Atlas

Homologous match to HL_4LFB_003

Geometric discrepancy: 0.2476

The information below is about HL_4LFB_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6XHV|1|2a|G|158
6XHV|1|2a|G|159
6XHV|1|2a|A|160
6XHV|1|2a|A|161
6XHV|1|2a|A|162
6XHV|1|2a|C|163

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2T

50S ribosomal protein L19

Chain 2t

30S ribosomal protein S20