HL_6XHW_082

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

6XHW|1|1a|C|470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XHW_082 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.1595

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6XHW|1|1a|C|458
6XHW|1|1a|G|460
6XHW|1|1a|A|461
6XHW|1|1a|C|470
6XHW|1|1a|G|471
6XHW|1|1a|A|472
6XHW|1|1a|G|473

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16