HL_6XHW_136

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

6XHW|1|2A|A|781, 6XHW|1|2A|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XHW_136 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.0568

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6XHW|1|2A|U|779
6XHW|1|2A|G|780
6XHW|1|2A|A|781
6XHW|1|2A|A|782
6XHW|1|2A|A|783
6XHW|1|2A|A|784
6XHW|1|2A|G|785

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2