HL_6XHW_225

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

6XHW|1|1A|U|1175, 6XHW|1|1A|G|1176, 6XHW|1|1A|A|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XHW_225 not in the Motif Atlas

Homologous match to HL_9DFE_029

Geometric discrepancy: 0.4479

The information below is about HL_9DFE_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XHW|1|1A|G|1171
6XHW|1|1A|G|1173
6XHW|1|1A|A|1174
6XHW|1|1A|U|1175
6XHW|1|1A|G|1176
6XHW|1|1A|A|1177
6XHW|1|1A|C|1178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains