3D structure

PDB id
6XHW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CAGCC(7MG)
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XHW_235 not in the Motif Atlas
Homologous match to HL_4LFB_033
Geometric discrepancy: 0.115
The information below is about HL_4LFB_033
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

6XHW|1|2a|C|522
6XHW|1|2a|A|523
6XHW|1|2a|G|524
6XHW|1|2a|C|525
6XHW|1|2a|C|526
6XHW|1|2a|7MG|527

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2l
30S ribosomal protein S12
Chain 2v
mRNA

Coloring options:


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