HL_6XHX_115

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

6XHX|1|2A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XHX_115 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0517

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6XHX|1|2A|G|382
6XHX|1|2A|U|383
6XHX|1|2A|U|384
6XHX|1|2A|C|385
6XHX|1|2A|G|386
6XHX|1|2A|U|387
6XHX|1|2A|G|388
6XHX|1|2A|G|389
6XHX|1|2A|A|390
6XHX|1|2A|G|391
6XHX|1|2A|C|392

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15