HL_6XHX_126

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

6XHX|1|2A|A|781, 6XHX|1|2A|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XHX_126 not in the Motif Atlas

Homologous match to HL_7RQB_024

Geometric discrepancy: 0.0469

The information below is about HL_7RQB_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74322.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

4

Unit IDs

6XHX|1|2A|U|779
6XHX|1|2A|G|780
6XHX|1|2A|A|781
6XHX|1|2A|A|782
6XHX|1|2A|A|783
6XHX|1|2A|A|784
6XHX|1|2A|G|785

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2