HL_6XHX_137

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6XHX|1|2A|U|1396, 6XHX|1|2A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XHX_137 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0839

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6XHX|1|2A|G|1389
6XHX|1|2A|U|1390
6XHX|1|2A|U|1391
6XHX|1|2A|A|1392
6XHX|1|2A|A|1393
6XHX|1|2A|U|1394
6XHX|1|2A|A|1395
6XHX|1|2A|U|1396
6XHX|1|2A|U|1397
6XHX|1|2A|C|1398

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23