HL_6XHX_208

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CCCUUGGG

Length

8 nucleotides

Bulged bases

6XHX|1|1a|U|189|||F, 6XHX|1|1a|G|189|||G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XHX_208 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3377

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6XHX|1|1a|C|189|||B
6XHX|1|1a|C|189|||C
6XHX|1|1a|C|189|||D
6XHX|1|1a|U|189|||E
6XHX|1|1a|U|189|||F
6XHX|1|1a|G|189|||G
6XHX|1|1a|G|189|||H
6XHX|1|1a|G|189|||I

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1q

30S ribosomal protein S17

Chain 1t

30S ribosomal protein S20