HL_6XHX_212

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

6XHX|1|2a|U|202, 6XHX|1|2a|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XHX_212 not in the Motif Atlas

Homologous match to HL_6CZR_234

Geometric discrepancy: 0.3089

The information below is about HL_6CZR_234

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

6XHX|1|2a|C|201
6XHX|1|2a|U|202
6XHX|1|2a|U|203
6XHX|1|2a|U|204
6XHX|1|2a|G|216

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains