HL_6XJQ_003

3D structure

PDB id

6XJQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a self-alkylating ribozyme - alkylated form with biotinylated epoxide substrate

Experimental method

X-RAY DIFFRACTION

Resolution

1.708 Å

Loop

Sequence

GCCCGUUAUC

Length

10 nucleotides

Bulged bases

6XJQ|1|A|U|31, 6XJQ|1|A|U|32, 6XJQ|1|A|A|33, 6XJQ|1|A|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24792.1

Basepair signature

cWW-cWS-F-F-F

Number of instances in this motif group

1

Unit IDs

6XJQ|1|A|G|26
6XJQ|1|A|C|27
6XJQ|1|A|C|28
6XJQ|1|A|C|29
6XJQ|1|A|G|30
6XJQ|1|A|U|31
6XJQ|1|A|U|32
6XJQ|1|A|A|33
6XJQ|1|A|U|34
6XJQ|1|A|C|35

Current chains

Chain A

Self-alkylating ribozyme (58-MER)

Nearby chains

Chain C

Fab HAVx Heavy Chain

Chain D

Fab HAVx Light Chain

Chain H

Fab HAVx Heavy Chain

Chain L

Fab HAVx Light Chain