HL_6XQD_014

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

6XQD|1|1A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XQD_014 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.0717

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

6XQD|1|1A|G|410
6XQD|1|1A|G|411
6XQD|1|1A|A|412
6XQD|1|1A|C|413
6XQD|1|1A|C|414
6XQD|1|1A|A|415
6XQD|1|1A|C|416
6XQD|1|1A|C|417

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15