HL_6XQD_026

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGGGCCCACCAGCCUACC

Length

19 nucleotides

Bulged bases

6XQD|1|1A|C|888, 6XQD|1|1A|C|889, 6XQD|1|1A|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQD|1|1A|G|879
6XQD|1|1A|G|880
6XQD|1|1A|G|881
6XQD|1|1A|G|882
6XQD|1|1A|G|883
6XQD|1|1A|C|884
6XQD|1|1A|C|885
6XQD|1|1A|C|886
6XQD|1|1A|A|887
6XQD|1|1A|C|888
6XQD|1|1A|C|889
6XQD|1|1A|A|890
6XQD|1|1A|G|892
6XQD|1|1A|C|893
6XQD|1|1A|C|894
6XQD|1|1A|U|895
6XQD|1|1A|A|896
6XQD|1|1A|C|897
6XQD|1|1A|C|898

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16

Chain 1Z

50S ribosomal protein L25

Chain 1m

30S ribosomal protein S13