3D structure

PDB id
6XQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GGGGGCCCACCAGCCUACC
Length
19 nucleotides
Bulged bases
6XQD|1|1A|C|888, 6XQD|1|1A|C|889, 6XQD|1|1A|A|896
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XQD|1|1A|G|879
6XQD|1|1A|G|880
6XQD|1|1A|G|881
6XQD|1|1A|G|882
6XQD|1|1A|G|883
6XQD|1|1A|C|884
6XQD|1|1A|C|885
6XQD|1|1A|C|886
6XQD|1|1A|A|887
6XQD|1|1A|C|888
6XQD|1|1A|C|889
6XQD|1|1A|A|890
6XQD|1|1A|G|892
6XQD|1|1A|C|893
6XQD|1|1A|C|894
6XQD|1|1A|U|895
6XQD|1|1A|A|896
6XQD|1|1A|C|897
6XQD|1|1A|C|898

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1Q
50S ribosomal protein L16
Chain 1Z
50S ribosomal protein L25
Chain 1m
30S ribosomal protein S13

Coloring options:

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