HL_6XQD_155

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CG(PSU)AAC(5MU)A(PSU)AA(4OC)G

Length

13 nucleotides

Bulged bases

6XQD|1|2A|A|1913, 6XQD|1|2A|C|1914, 6XQD|1|2A|A|1916

QA status

Modified nucleotides: PSU, 5MU, 4OC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XQD_155 not in the Motif Atlas

Homologous match to HL_7RQB_048

Geometric discrepancy: 0.1287

The information below is about HL_7RQB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQD|1|2A|C|1909
6XQD|1|2A|G|1910
6XQD|1|2A|PSU|1911
6XQD|1|2A|A|1912
6XQD|1|2A|A|1913
6XQD|1|2A|C|1914
6XQD|1|2A|5MU|1915
6XQD|1|2A|A|1916
6XQD|1|2A|PSU|1917
6XQD|1|2A|A|1918
6XQD|1|2A|A|1919
6XQD|1|2A|4OC|1920
6XQD|1|2A|G|1921

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA