HL_6XQD_227

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUGAAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XQD_227 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.301

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6XQD|1|2a|G|1010
6XQD|1|2a|G|1011
6XQD|1|2a|U|1012
6XQD|1|2a|G|1013
6XQD|1|2a|A|1014
6XQD|1|2a|A|1015
6XQD|1|2a|A|1016
6XQD|1|2a|G|1017
6XQD|1|2a|C|1018
6XQD|1|2a|C|1019

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19