HL_6XQE_080
3D structure
- PDB id
- 6XQE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUGAGAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XQE_080 not in the Motif Atlas
- Geometric match to HL_7A0S_056
- Geometric discrepancy: 0.2338
- The information below is about HL_7A0S_056
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_04259.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6XQE|1|1a|C|295
6XQE|1|1a|U|296
6XQE|1|1a|G|297
6XQE|1|1a|A|298
6XQE|1|1a|G|299
6XQE|1|1a|A|300
6XQE|1|1a|G|301
6XQE|1|1a|G|302
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
- Chain 1e
- 30S ribosomal protein S5
- Chain 1l
- 30S ribosomal protein S12
- Chain 1q
- 30S ribosomal protein S17
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