HL_6XQE_081

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XQE_081 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1137

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6XQE|1|1a|C|320
6XQE|1|1a|A|321
6XQE|1|1a|C|322
6XQE|1|1a|U|323
6XQE|1|1a|G|324
6XQE|1|1a|A|325
6XQE|1|1a|G|326
6XQE|1|1a|A|327
6XQE|1|1a|C|328
6XQE|1|1a|A|329
6XQE|1|1a|C|330
6XQE|1|1a|G|331
6XQE|1|1a|G|332
6XQE|1|1a|G|333

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16

Chain 1t

30S ribosomal protein S20