HL_6XQE_143

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6XQE|1|2A|U|1396, 6XQE|1|2A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XQE_143 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1219

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6XQE|1|2A|G|1389
6XQE|1|2A|U|1390
6XQE|1|2A|U|1391
6XQE|1|2A|A|1392
6XQE|1|2A|A|1393
6XQE|1|2A|U|1394
6XQE|1|2A|A|1395
6XQE|1|2A|U|1396
6XQE|1|2A|U|1397
6XQE|1|2A|C|1398

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23