HL_6XQE_228

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGCC(7MG)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XQE_228 not in the Motif Atlas

Homologous match to HL_4LFB_033

Geometric discrepancy: 0.2085

The information below is about HL_4LFB_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6XQE|1|2a|C|522
6XQE|1|2a|A|523
6XQE|1|2a|G|524
6XQE|1|2a|C|525
6XQE|1|2a|C|526
6XQE|1|2a|7MG|527

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12