HL_6XYW_003

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

6XYW|1|1|A|118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_003 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.2495

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6XYW|1|1|G|116
6XYW|1|1|G|117
6XYW|1|1|A|118
6XYW|1|1|A|119
6XYW|1|1|A|120
6XYW|1|1|C|121

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AG

At5g40080

Chain At

At4g39880