HL_6XYW_007

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_007 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.2162

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

6XYW|1|1|C|231
6XYW|1|1|G|232
6XYW|1|1|G|233
6XYW|1|1|C|234
6XYW|1|1|G|235
6XYW|1|1|A|236
6XYW|1|1|G|237

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AD

Ribosomal protein L35

Chain Al

Ribosomal protein L18e/L15 superfamily protein