HL_6XYW_011

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUGAUAGCC

Length

9 nucleotides

Bulged bases

6XYW|1|1|G|462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_011 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.1976

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

6XYW|1|1|G|460
6XYW|1|1|U|461
6XYW|1|1|G|462
6XYW|1|1|A|463
6XYW|1|1|U|464
6XYW|1|1|A|465
6XYW|1|1|G|466
6XYW|1|1|C|467
6XYW|1|1|C|468

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ad

50S ribosomal protein L4

Chain Au

50S ribosomal protein L24