HL_6XYW_017
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- UUUUGCAUGA
- Length
- 10 nucleotides
- Bulged bases
- 6XYW|1|1|G|724
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XYW_017 not in the Motif Atlas
- Homologous match to HL_5J7L_150
- Geometric discrepancy: 0.1811
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6XYW|1|1|U|716
6XYW|1|1|U|717
6XYW|1|1|U|718
6XYW|1|1|U|719
6XYW|1|1|G|720
6XYW|1|1|C|721
6XYW|1|1|A|722
6XYW|1|1|U|723
6XYW|1|1|G|724
6XYW|1|1|A|725
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain Ac
- 50S ribosomal protein L3-2, mitochondrial
- Chain Al
- Ribosomal protein L18e/L15 superfamily protein
- Chain Ar
- 50S ribosomal protein L21, mitochondrial
Coloring options: