HL_6XYW_020

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUCUAACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_020 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.36

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6XYW|1|1|C|855
6XYW|1|1|U|856
6XYW|1|1|C|857
6XYW|1|1|U|858
6XYW|1|1|A|859
6XYW|1|1|A|860
6XYW|1|1|C|861
6XYW|1|1|A|862
6XYW|1|1|G|863

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain Bn

At1g15810/F7H2_23