HL_6XYW_025
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GGGUGCUAAGAUC
- Length
- 13 nucleotides
- Bulged bases
- 6XYW|1|1|C|1106, 6XYW|1|1|G|1110
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XYW_025 not in the Motif Atlas
- Geometric match to HL_5ID6_001
- Geometric discrepancy: 0.2004
- The information below is about HL_5ID6_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.4
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
6XYW|1|1|G|1101
6XYW|1|1|G|1102
6XYW|1|1|G|1103
6XYW|1|1|U|1104
6XYW|1|1|G|1105
6XYW|1|1|C|1106
6XYW|1|1|U|1107
6XYW|1|1|A|1108
6XYW|1|1|A|1109
6XYW|1|1|G|1110
6XYW|1|1|A|1111
6XYW|1|1|U|1112
6XYW|1|1|C|1113
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain 3
- RNA (118-MER)
- Chain AL
- Uncharacterized protein At1g27435/F17L21.30
- Chain Am
- 60S ribosomal protein L16, mitochondrial
Coloring options: