HL_6XYW_030

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GGUGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_030 not in the Motif Atlas

Homologous match to HL_7A0S_031

Geometric discrepancy: 0.3554

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6XYW|1|1|G|1378
6XYW|1|1|G|1379
6XYW|1|1|U|1380
6XYW|1|1|G|1381
6XYW|1|1|A|1382
6XYW|1|1|C|1383

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AH

Mitochondrial ribosomal protein L51/S25/CI-B8 family protein

Chain Aq

50S ribosomal protein L20

Chain Ar

50S ribosomal protein L21, mitochondrial