HL_6XYW_031

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUGAAAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_031 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.2597

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

6XYW|1|1|G|1437
6XYW|1|1|U|1438
6XYW|1|1|G|1439
6XYW|1|1|A|1440
6XYW|1|1|A|1441
6XYW|1|1|A|1442
6XYW|1|1|A|1443
6XYW|1|1|A|1444
6XYW|1|1|C|1445

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain An

At5g09770

Chain As

AT1G52370 protein