HL_6XYW_036

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CAGG

Length

4 nucleotides

Bulged bases

6XYW|1|1|A|1889

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_036 not in the Motif Atlas

Geometric match to HL_7A0S_039

Geometric discrepancy: 0.1083

The information below is about HL_7A0S_039

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6XYW|1|1|C|1888
6XYW|1|1|A|1889
6XYW|1|1|G|1890
6XYW|1|1|G|1891

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Aa

60S ribosomal protein L2, mitochondrial

Chain Ab

Expressed protein