HL_6XYW_038

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6XYW|1|1|A|1951, 6XYW|1|1|A|1953

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_038 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1484

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6XYW|1|1|C|1947
6XYW|1|1|G|1948
6XYW|1|1|A|1949
6XYW|1|1|C|1950
6XYW|1|1|A|1951
6XYW|1|1|C|1952
6XYW|1|1|A|1953
6XYW|1|1|G|1954

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain As

AT1G52370 protein