HL_6XYW_045

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UGUUAUAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_045 not in the Motif Atlas

Homologous match to HL_4WF9_045

Geometric discrepancy: 0.5575

The information below is about HL_4WF9_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XYW|1|1|U|2181
6XYW|1|1|G|2182
6XYW|1|1|U|2183
6XYW|1|1|U|2184
6XYW|1|1|A|2185
6XYW|1|1|U|2186
6XYW|1|1|A|2187
6XYW|1|1|A|2188
6XYW|1|1|G|2189

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AK

At4g22000