HL_6XYW_048
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 6XYW|1|1|A|2341, 6XYW|1|1|A|2342, 6XYW|1|1|G|2343, 6XYW|1|1|U|2345, 6XYW|1|1|G|2346
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XYW_048 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.1553
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6XYW|1|1|G|2338
6XYW|1|1|U|2339
6XYW|1|1|G|2340
6XYW|1|1|A|2341
6XYW|1|1|A|2342
6XYW|1|1|G|2343
6XYW|1|1|A|2344
6XYW|1|1|U|2345
6XYW|1|1|G|2346
6XYW|1|1|C|2347
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain AB
- At1g26740/T24P13_11
- Chain AL
- Uncharacterized protein At1g27435/F17L21.30
- Chain Ac
- 50S ribosomal protein L3-2, mitochondrial
Coloring options: