HL_6XYW_050

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CCGCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_050 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2995

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6XYW|1|1|C|2499
6XYW|1|1|C|2500
6XYW|1|1|G|2501
6XYW|1|1|C|2502
6XYW|1|1|G|2521
6XYW|1|1|G|2522

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Aa

60S ribosomal protein L2, mitochondrial

Chain Ab

Expressed protein