HL_6XYW_051

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6XYW|1|1|G|2552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_051 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1632

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6XYW|1|1|C|2550
6XYW|1|1|U|2551
6XYW|1|1|G|2552
6XYW|1|1|G|2553
6XYW|1|1|G|2554
6XYW|1|1|G|2555
6XYW|1|1|C|2556
6XYW|1|1|G|2557
6XYW|1|1|G|2558

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Am

60S ribosomal protein L16, mitochondrial

Chain Aw

50S ribosomal protein L27