HL_6XYW_054

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GCGUAAUGGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_054 not in the Motif Atlas

Geometric match to HL_8H1B_001

Geometric discrepancy: 0.3568

The information below is about HL_8H1B_001

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6XYW|1|1|G|2621
6XYW|1|1|C|2622
6XYW|1|1|G|2623
6XYW|1|1|U|2624
6XYW|1|1|A|2625
6XYW|1|1|A|2626
6XYW|1|1|U|2627
6XYW|1|1|G|2628
6XYW|1|1|G|2629
6XYW|1|1|U|2630

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Aw

50S ribosomal protein L27