HL_6XYW_057

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

6XYW|1|1|U|2704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_057 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1505

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

6XYW|1|1|C|2702
6XYW|1|1|G|2703
6XYW|1|1|U|2704
6XYW|1|1|G|2705
6XYW|1|1|U|2706
6XYW|1|1|G|2707
6XYW|1|1|G|2708
6XYW|1|1|A|2709
6XYW|1|1|A|2710
6XYW|1|1|G|2711

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AK

At4g22000

Chain Al

Ribosomal protein L18e/L15 superfamily protein