HL_6XYW_058

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

AGCUCUUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_058 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.2977

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6XYW|1|1|A|2769
6XYW|1|1|G|2770
6XYW|1|1|C|2771
6XYW|1|1|U|2772
6XYW|1|1|C|2773
6XYW|1|1|U|2774
6XYW|1|1|U|2775
6XYW|1|1|A|2776
6XYW|1|1|U|2777

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AE

Ribosomal protein

Chain Af

Putative ribosomal protein L6

Chain Am

60S ribosomal protein L16, mitochondrial