HL_6XYW_062

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_062 not in the Motif Atlas

Homologous match to HL_7RQB_064

Geometric discrepancy: 0.2566

The information below is about HL_7RQB_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6XYW|1|1|C|2960
6XYW|1|1|G|2961
6XYW|1|1|A|2962
6XYW|1|1|G|2963
6XYW|1|1|A|2964
6XYW|1|1|G|2965

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Af

Putative ribosomal protein L6

Chain Ak

50S ribosomal protein HLP, mitochondrial